
Running a business as an Amazon seller involves far more than just listing products and managing inventory. You’re dealing with FBA fees, multi-channel sales data, VAT thresholds, and customer refunds, all while striving to scale your operations. Whether you’re managing Amazon FBA, building a private label brand, or selling internationally, your accounting setup must work as efficiently as your logistics.
Over 30% of UK Amazon sellers face VAT filing penalties due to errors in their returns, and sellers lose an average of 15% in profit annually because of poorly tracked costs. Pearl Lemon Accountants provides specialised accounting services in the UK that ensure your business is HMRC-compliant, profitable, and primed for success.
Accounting Services Designed for Amazon Sellers
Every Amazon seller operates differently. We build accounting solutions that cater to the unique needs of FBA sellers, private label brands, and marketplace vendors.
Integrating Amazon Seller Central for Accuracy
Syncing your sales, fees, and refunds from Amazon Seller Central with accounting platforms like A2X, Xero, and QuickBooks is critical. This ensures every transaction is accounted for and reconciled automatically, saving you time and reducing errors.
💡 Example: A UK seller managing two Amazon accounts reduced reconciliation errors by 40% after automating their accounting system with us.


Managing VAT Obligations for Amazon Sellers
From VAT thresholds to OSS compliance for EU sales, we manage every aspect of VAT reporting. Our services ensure you avoid penalties and file accurate returns, even if you’re handling multi-country shipments.
💡 Stat: Sellers using automated VAT reporting save an average of £3,000 annually in penalties and missed deductions.
Tracking Amazon FBA Fees and Advertising Costs
Fulfilment by Amazon (FBA) sellers face challenges like storage fees, fulfilment charges, and PPC (pay-per-click) advertising costs. We track these expenses in detail, ensuring they are correctly categorised for tax deductions.
💡 Example: An Amazon private label seller saved £10,000 in taxes by accurately recording their FBA costs and advertising spend.


Monitoring Inventory and COGS for Profitability
Inventory mismanagement can eat into your profits. We provide cost of goods sold (COGS) tracking that accounts for manufacturing, shipping, and storage costs, giving you a clear picture of your profit margins.
💡 Stat: Businesses using detailed COGS tracking report 20% higher profitability than those relying on estimates.
Our Process: Built for Amazon Sellers’ Challenges
We understand the fast-paced nature of Amazon selling. Our process is designed to meet the needs of both experienced sellers and newcomers.
Automating Data Capture
We integrate your Amazon Seller Central account with tools like Link My Books, ensuring that sales, fees, and refunds flow directly into your accounting system.


Providing Clear Financial Reports
You’ll receive monthly profit and loss (P&L) statements, VAT summaries, and cash flow insights, giving you a comprehensive view of your finances.
Ensuring Compliance with Tax Laws
From VAT OSS for international sales to HMRC filings, we ensure your taxes are accurate and submitted on time, avoiding costly penalties.
Ongoing Financial Support
Our team provides actionable advice to optimise your cash flow, prepare for seasonal spikes, and handle refunds or chargebacks with ease.
Tools and Expertise That Keep You Ahead
Amazon sellers require precision and efficiency in managing their finances. Here’s how we deliver:
Automated Reconciliation Systems
We streamline reconciliation with tools like A2X, reducing manual entry and ensuring your accounts match Amazon’s detailed reports.
💡 Stat: Automated reconciliation can save sellers an average of 10-15 hours per month.


Advanced VAT Compliance for Cross-Border Sales
Selling in the EU? We handle VAT OSS filings, calculate the correct VAT rates for each destination, and ensure compliance with local regulations.
Multi-Currency Management for Global Sellers
Selling in GBP, USD, and EUR? Our system reconciles exchange rate differences and tracks multi-currency sales accurately, ensuring you don’t lose profit to currency fluctuations.
💡 Example: A client selling in three currencies saved £7,500 by eliminating exchange rate discrepancies.
Refund and Discount Tracking
Handling customer refunds and discounts can complicate your accounts. We ensure these adjustments are accurately recorded, maintaining a clean and reliable revenue record.
Expertise in Amazon-Specific Costs
From Amazon PPC to long-term storage fees, we categorise expenses that directly impact your P&L, ensuring transparency and accuracy.

Frequently Asked Questions
We calculate VAT rates for every country and handle VAT OSS filings, ensuring compliance with EU tax regulations.
Yes, we automate multi-currency reconciliation for GBP, USD, and EUR, ensuring exchange rate fluctuations are recorded accurately.
We use tools like A2X to categorise FBA fees under fulfilment and storage, ensuring accurate profit tracking.
We work with leading accounting tools like Xero, QuickBooks, and A2X to streamline financial management and automate bookkeeping for Amazon sellers
Yes, we reconcile refunds and chargebacks directly from Amazon Seller Central, ensuring they are reflected accurately in your financial records.
Yes, we manage multi-currency reconciliations, ensuring accurate conversions and financial reporting for Amazon sellers operating in multiple marketplaces.
Let’s Help You Master Your Amazon Finances
Accounting for Amazon sellers isn’t just about compliance; it’s about clarity, profitability, and staying ahead in a competitive marketplace. Sellers using advanced accounting services report a 20% improvement in their net profits by reducing errors and maximising tax deductions.
You focus on delivering products your customers love—we’ll handle the numbers. Together, we’ll make sure your business thrives, one accurate report at a time.